Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF771_chr16_30402606_30424414	0/0	c0005	954	1	0	1	0	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	c0006	954	1	0	0	1	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	c0007	954	1	0	0	1	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF772_chr19_57464586_57482566	0/1	c0001	1350	145	24	21	81	3	15	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	1/0	c0002	1347	139	45	17	58	5	13	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0003	1347	100	24	32	29	4	11	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0004	1347	4	0	0	4	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0005	1350	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0006	1350	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0007	1347	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0008	1347	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0009	1347	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	c0010	1347	1	0	0	0	0	1	copy fasta	ZNF772	chr19	57464586	57482566
ZNF773_chr19_57494938_57513229	1/1	c0001	1329	329	59	57	155	14	42	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0002	1329	76	34	10	28	2	2	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0003	1329	3	3	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0004	1329	2	0	0	2	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0005	1329	2	1	1	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0006	1329	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF774_chr15_90347284_90367847	0/0	c0001	1452	130	19	28	66	5	12	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	1/1	c0002	1452	98	16	21	34	6	19	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0003	1452	72	13	12	41	1	5	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0004	1452	55	18	4	30	1	2	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0005	1452	35	13	6	11	3	2	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0006	1452	7	1	2	4	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0007	1452	6	5	1	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0008	1452	2	1	1	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0009	1452	2	2	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0010	1452	2	2	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0011	1452	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0012	1452	1	0	1	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0013	1452	1	0	0	0	0	1	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0014	1452	1	0	0	0	0	1	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0015	1452	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0016	1452	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	c0017	1452	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF775_chr7_150374330_150403630	0/0	c0001	1614	158	49	41	40	7	21	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/1	c0002	1614	156	20	23	91	5	16	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	1/0	c0003	1614	58	15	6	27	2	7	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0004	1615	7	0	3	2	0	2	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0005	1614	4	4	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0006	1614	4	4	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0007	1615	2	0	0	2	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0008	1614	2	1	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0009	1614	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0011	1614	1	0	1	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630