Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF775_chr7_150374330_150403630	0/0	c0012	1614	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0013	1615	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0014	1615	1	1	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	c0015	1614	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF776_chr19_57741815_57763148	1/1	c0001	1557	397	83	77	178	17	40	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0002	1557	5	3	2	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0003	1557	3	3	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0004	1557	2	1	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0005	1557	2	1	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0006	1557	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0007	1557	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0008	1641	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0009	1557	1	0	0	0	0	1	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0010	1557	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0011	1557	1	0	0	0	0	1	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0012	1557	1	0	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0013	1557	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	c0014	1557	1	0	0	0	1	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF777_chr7_149426363_149466062	0/1	c0001	2496	221	31	39	129	7	14	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	1/0	c0002	2496	96	19	21	40	5	10	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0003	2496	37	6	1	18	0	12	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0004	2496	15	14	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0005	2496	14	4	4	4	0	2	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0006	2496	14	0	6	0	3	5	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0007	2496	12	11	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0008	2496	5	5	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0009	2496	5	0	1	0	1	3	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0010	2496	4	1	1	0	1	1	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0011	2496	3	0	0	3	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0012	2496	2	1	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0013	2496	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0014	2496	1	0	0	1	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0015	2496	1	0	0	0	1	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0016	2496	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0017	2496	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0018	2496	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0019	2496	1	0	0	1	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	c0020	2496	1	0	0	0	0	1	copy fasta	ZNF777	chr7	149426363	149466062
ZNF778_chr16_89212703_89242141	0/1	c0001	2274	169	18	36	84	16	14	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0002	2274	62	9	16	32	2	3	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0003	2274	48	17	0	28	0	3	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0004	2274	34	0	4	28	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0005	2274	26	0	8	12	0	6	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0006	2274	25	18	0	2	0	5	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0007	2274	15	10	0	3	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0008	2274	8	7	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	1/0	c0009	2274	5	3	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0010	2274	5	0	0	5	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0011	2274	5	0	0	0	0	5	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0012	2274	3	3	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141