Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF783_chr7_149257196_149289988	0/0	c0005	1641	5	5	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0006	1641	4	0	3	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0007	1641	4	0	0	4	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0008	1641	3	3	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0009	1641	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0010	1641	2	0	0	2	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0011	1641	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0012	1641	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0013	1641	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0014	1641	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0015	1641	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0016	1641	1	0	0	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0017	1641	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0018	1641	1	0	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0019	1641	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF784_chr19_55615741_55629566	1/1	c0001	972	382	96	81	148	14	41	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	c0002	972	3	0	2	0	0	1	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	c0003	972	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	c0004	972	1	0	1	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	c0005	972	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF785_chr16_30575656_30590697	1/1	c0001	1218	303	85	61	109	12	34	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	c0002	1218	5	4	1	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	c0003	1218	4	4	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	c0004	1218	3	1	0	0	2	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	c0005	1218	3	0	0	3	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF786_chr7_149064641_149095718	1/1	c0001	2349	264	86	51	91	13	21	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0002	2349	5	5	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0003	2204	1	0	0	0	1	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0004	2349	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0005	2349	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0006	2349	1	0	0	1	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0007	2349	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0008	2349	1	0	1	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0009	2349	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0010	2349	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0011	2349	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0012	2349	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	c0013	2349	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF787_chr19_56082366_56126295	0/1	c0001	1149	231	20	45	114	11	40	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0002	1152	58	0	19	39	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	1/0	c0003	1149	56	40	5	6	2	2	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0004	1150	10	0	3	5	1	1	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0005	1150	6	4	1	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0006	1149	6	6	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0007	1149	4	4	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0008	1149	4	2	2	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0009	1149	4	3	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0010	1149	3	2	1	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0011	1149	3	3	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0012	1149	3	0	0	3	0	0	copy fasta	ZNF787	chr19	56082366	56126295