Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF80_chr3_114229631_114242578	0/0	c0003	822	66	4	18	26	4	14	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0004	822	57	36	9	4	2	6	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0005	822	8	7	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0006	822	6	0	6	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0007	822	3	3	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0008	822	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0009	822	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0010	822	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0011	822	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	c0012	822	1	0	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF813_chr19_53462733_53501255	1/0	c0001	1854	96	6	18	58	4	9	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0002	1854	70	23	11	25	1	10	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0003	1854	52	8	6	35	0	3	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0004	1854	50	15	8	20	3	4	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0005	1854	47	0	6	40	0	1	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0006	1854	45	9	13	7	2	14	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/1	c0007	1854	29	5	9	6	4	4	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0008	1854	17	16	1	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0009	1854	5	0	0	5	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0010	1854	2	0	2	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0011	1854	2	0	0	2	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0012	1854	2	0	1	0	0	1	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0013	1854	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0014	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0015	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0016	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0017	1854	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0018	1854	1	0	1	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0019	1854	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0020	1854	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0021	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0022	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0023	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0024	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	c0025	1854	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF814_chr19_57864381_57894037	0/0	c0001	2571	208	36	44	92	7	29	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/1	c0002	2571	163	20	27	98	5	12	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0003	2571	31	30	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0004	2571	9	0	0	9	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0005	2571	5	0	4	0	1	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0006	2571	4	0	4	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0007	2571	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0008	2568	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0009	2403	2	0	1	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0010	2400	2	2	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0011	2571	1	0	0	0	1	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0012	2568	1	0	0	0	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	1/0	c0013	2568	1	0	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	c0014	2571	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF816_chr19_52944385_52967881	1/1	c0001	1956	165	10	36	87	8	22	copy fasta	ZNF816	chr19	52944385	52967881