Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF875_chr19_37329649_37369447	0/0	c0012	1923	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0013	1923	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0014	1923	1	0	1	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0015	1923	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0016	1923	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0017	1923	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	c0018	1923	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF878_chr19_12038805_12057961	1/1	c0001	1596	289	73	50	115	14	35	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0002	1596	35	6	6	17	0	6	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0003	1596	12	11	1	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0004	1596	6	6	0	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0005	1596	2	2	0	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0006	1596	1	0	0	0	0	1	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	c0007	1596	1	0	1	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF879_chr5_179018804_179040064	1/1	c0001	1692	284	49	49	136	11	37	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0002	1692	163	40	31	80	5	7	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0003	1692	2	2	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0004	1692	2	0	0	0	0	2	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0005	1692	1	0	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0006	1692	1	0	0	0	0	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0007	1692	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0008	1692	1	0	0	0	0	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	c0009	1692	1	0	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF880_chr19_52364923_52390795	1/0	c0001	1734	183	33	38	87	8	16	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0002	2203	128	12	28	62	4	22	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0003	1734	67	16	7	40	2	2	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0004	1734	15	0	3	12	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0005	2198	13	0	0	13	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0006	2203	10	10	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/1	c0007	1734	8	0	3	0	3	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0008	2201	4	3	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0009	2201	4	4	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0010	1734	3	3	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0011	2203	2	1	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0012	1734	2	0	2	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0013	2204	2	1	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0014	2203	2	0	0	0	1	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0015	2203	2	0	2	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0016	1734	1	0	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0017	2198	1	0	0	0	0	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0018	2199	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0019	2204	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0020	1734	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0021	1734	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0022	2201	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0023	1734	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0024	1734	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0025	2202	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0026	2203	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	c0027	2203	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795