Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF880_chr19_52364923_52390795	0/0	c0028	1734	1	0	0	0	0	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF883_chr9_112983129_113017192	1/1	c0001	1140	425	79	80	212	15	37	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0002	1140	6	0	0	0	1	5	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0003	1140	4	4	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0004	1140	4	4	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0005	1140	2	0	0	2	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0006	1140	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0008	1140	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0009	1140	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	c0010	1140	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF888_chr19_52899415_52928428	1/0	c0001	2157	112	5	27	63	6	10	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0002	2157	94	12	22	45	1	14	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0003	2157	78	47	7	20	1	3	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/1	c0004	2157	77	13	15	32	3	13	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0005	2157	12	2	1	6	0	3	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0006	2157	11	0	0	9	2	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0007	2157	7	6	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0008	2157	6	0	3	0	2	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0009	2157	3	0	3	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0010	2157	3	3	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0011	2154	3	3	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0012	2157	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0013	2157	2	0	0	0	2	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0014	2157	2	0	0	0	1	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0015	2157	2	0	2	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0016	2157	1	0	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0017	2157	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0018	2157	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0019	2154	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0020	2154	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0021	2157	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0022	2157	1	0	0	1	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0023	2157	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0024	2157	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0025	2157	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0026	2157	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	c0027	2157	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF891_chr12_133099779_133135274	1/1	c0001	1635	295	66	66	121	9	31	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0002	1635	49	1	8	21	7	12	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0003	1635	25	22	2	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0004	1634	7	4	3	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0005	1635	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0006	1635	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0007	1635	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0008	1635	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0009	1635	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	c0010	1635	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF892_chr2_95202521_95228839	1/1	c0001	1569	324	75	58	142	10	37	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	c0002	1569	3	0	0	0	0	3	copy fasta	ZNF892	chr2	95202521	95228839