Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNFX1_chr20_49240900_49283057	0/0	c0008	5757	4	4	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0009	5757	4	0	4	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0010	5757	2	2	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0011	5757	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0012	5757	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0013	5757	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0014	5757	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0015	5757	1	0	1	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0016	5757	1	0	1	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0017	5757	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0018	5757	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0019	5757	1	0	0	0	0	1	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0020	5757	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0021	5757	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0022	5757	1	0	1	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0023	5757	1	0	0	0	1	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0024	5757	1	0	0	0	1	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	c0025	5757	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNG1A_chr9_115837_184056	0/1	c0001	1188	149	46	22	61	4	15	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0002	1188	127	12	38	57	4	16	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	1/0	c0003	1188	74	15	15	32	4	7	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0004	1188	11	0	1	10	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0005	1188	9	5	0	1	0	3	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0006	1188	9	3	4	2	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0007	1188	4	4	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0008	1188	3	0	0	3	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0009	1188	2	0	0	2	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0010	1188	2	2	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0011	1188	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0012	1188	1	1	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0013	1188	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	c0014	1188	1	0	0	0	0	1	copy fasta	ZNG1A	chr9	115837	184056
ZNG1B_chr2_113432691_113501204	1/1	c0001	1188	154	48	34	42	6	22	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0002	1188	93	12	22	48	3	8	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0003	1188	20	20	0	0	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0004	1188	5	2	0	0	0	3	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0005	1188	1	0	0	1	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0006	1188	1	0	0	1	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0007	1188	1	0	0	0	0	1	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	c0008	1188	1	0	0	0	1	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1C_chr9_68236983_68305035	0/0	c0001	1189	200	52	43	78	12	15	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0002	1188	98	16	11	60	4	7	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0003	1189	7	0	0	7	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0004	1189	5	0	3	2	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0005	1189	4	4	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0006	1189	3	0	3	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0007	1189	2	2	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0008	1189	1	1	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0009	1189	1	0	0	1	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	c0010	1188	1	1	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035