Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNG1E_chr9_65670928_65739041	0/0	c0001	1188	116	23	18	60	6	9	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0002	1188	55	5	12	28	3	7	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0003	1188	10	1	2	6	1	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0004	1188	7	1	5	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0005	1188	5	2	0	3	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0006	1188	4	2	2	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0008	1188	1	0	1	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0009	1188	1	1	0	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	c0011	1188	1	1	0	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1F_chr9_41126309_41194317	0/0	c0001	1188	107	13	24	58	5	7	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0002	1188	57	27	7	11	0	12	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/1	c0003	1188	44	4	16	14	0	9	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0004	1188	41	6	9	21	1	4	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0005	1188	20	0	0	18	0	2	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	1/0	c0006	1188	20	18	1	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0007	1188	6	6	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0008	1188	5	0	0	5	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0010	1188	1	0	1	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0011	1188	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	c0012	1188	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNHIT1_chr7_101213165_101229190	1/1	c0001	465	389	92	52	179	18	46	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	c0002	465	1	1	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	c0003	480	1	0	0	1	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	c0004	465	1	1	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT2_chr11_65111403_65122701	0/1	c0001	1212	286	51	56	135	15	28	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	1/0	c0002	1212	43	14	8	9	1	10	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0003	1212	20	10	1	8	0	1	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0004	1212	10	8	2	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0005	1212	6	6	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0006	1212	5	0	0	5	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0007	1212	4	0	0	4	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0008	1212	2	2	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0009	1212	2	2	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0010	1212	1	1	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0011	1212	1	0	0	0	0	1	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0012	1212	1	1	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0013	1212	1	0	1	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0014	1212	1	1	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	c0015	1212	1	0	0	1	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT3_chr17_36481681_36500822	0/1	c0001	468	377	81	67	170	16	42	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	c0002	468	6	5	1	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	c0003	468	1	0	0	1	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	c0004	468	1	0	0	1	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	c0005	468	1	1	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	c0006	468	1	1	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT6_chr1_85644417_85713433	1/1	c0001	1413	369	92	65	169	12	29	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	c0002	1413	3	0	3	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433