Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSCAN5C_chr19_56197273_56214461	0/0	c0034	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0035	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0036	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0037	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0038	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0039	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0040	1491	1	0	0	0	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0041	1491	1	0	1	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0042	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0043	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0044	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0045	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0046	1491	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0047	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0048	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0049	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0050	1491	1	0	0	0	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0051	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0052	1491	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	c0053	1491	1	0	1	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN9_chr6_28220275_28238487	1/1	c0001	1185	407	90	70	192	14	39	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	c0002	1185	5	0	0	3	0	2	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	c0003	1185	1	0	0	1	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	c0004	1185	1	0	0	0	0	1	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	c0005	1185	1	1	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	c0006	1185	1	1	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSWIM1_chr20_45876227_45890266	1/1	c0001	1458	360	89	51	175	12	31	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0002	1458	16	1	0	9	1	5	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0003	1458	12	3	6	0	2	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0004	1458	8	2	5	0	1	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0005	1458	5	0	1	3	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0006	1458	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0007	1458	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	c0008	1458	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM2_chr2_186822475_186854170	1/1	c0001	1902	184	43	37	81	6	15	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0002	1902	69	5	18	28	6	12	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0003	1902	49	27	7	9	2	4	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0004	1902	4	4	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0005	1902	3	3	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0006	1902	3	2	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0007	1902	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0008	1902	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0009	1902	2	0	0	0	0	2	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0010	1902	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0011	1902	1	0	0	0	0	1	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0012	1902	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0013	1902	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0014	1902	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0015	1902	1	0	0	1	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	c0016	1902	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170