Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSWIM5_chr1_45011399_45211605	0/0	c0001	3558	74	17	17	30	4	6	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/1	c0002	3558	65	33	8	15	5	3	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	1/0	c0003	3558	47	5	14	23	0	4	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0004	3558	15	0	10	3	2	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0005	3558	7	6	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0006	3558	6	0	0	6	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0007	3558	4	3	1	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0008	3558	4	1	1	0	0	2	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0009	3558	4	4	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0010	3558	1	0	1	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0011	3558	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0012	3558	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0013	3558	1	0	0	0	0	1	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0014	3558	1	0	0	0	1	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0015	3558	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0016	3558	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	c0017	3558	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM6_chr5_61327258_61551172	0/1	c0001	3633	126	61	16	31	5	12	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0002	3636	25	9	11	0	3	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0003	3633	25	3	5	8	3	6	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0004	3627	21	0	2	17	0	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0005	3633	15	4	1	9	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0006	3636	14	1	7	0	1	5	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0007	3630	7	0	0	7	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0008	3633	5	0	5	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0009	3624	3	0	0	3	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0010	3636	2	0	2	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0011	3636	2	0	0	0	0	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0012	3648	2	0	0	0	0	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0013	3630	2	0	0	2	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0014	3627	2	0	2	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0015	3621	2	0	0	1	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0016	3627	2	0	0	0	1	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0017	3627	2	0	2	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0018	3603	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0019	3606	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0020	3639	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0021	3639	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0022	3636	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0023	3639	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0024	3633	1	0	0	1	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0025	3636	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0026	3609	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0027	3633	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0028	3633	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0029	3633	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	1/0	c0030	3648	1	0	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0031	3636	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0032	3633	1	0	0	0	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0033	3633	1	0	0	0	1	0	copy fasta	ZSWIM6	chr5	61327258	61551172