Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZSWIM6_chr5_61327258_61551172	0/0	c0034	3633	1	0	0	1	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0035	3606	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	c0036	3627	1	0	0	0	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM7_chr17_15971560_16004704	1/1	c0001	423	342	92	64	132	12	40	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	c0002	423	2	2	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM8_chr10_73780606_73806793	1/1	c0001	5505	169	36	33	78	2	18	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0002	5505	77	30	14	14	9	10	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0003	5505	47	8	5	24	1	9	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0004	5505	7	1	0	6	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0005	5505	3	3	0	0	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0006	5505	2	0	2	0	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0007	5505	2	0	0	2	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0008	5505	1	1	0	0	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0009	5505	1	0	0	0	0	1	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0010	5505	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0011	5505	1	1	0	0	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0012	5505	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0013	5505	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	c0014	5505	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM9_chr19_48165680_48202620	1/1	c0001	2763	172	24	29	91	8	18	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0002	2763	142	27	40	55	3	17	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0003	2763	37	14	5	10	1	7	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0004	2763	16	12	2	2	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0005	2763	4	4	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0006	2763	4	4	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0007	2763	3	3	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0008	2763	2	1	1	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0009	2763	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0010	2763	1	1	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0011	2763	1	1	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0012	2763	1	1	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0013	2763	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0014	2763	1	0	1	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0015	2763	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	c0016	2763	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZUP1_chr6_116630618_116673766	1/1	c0001	1737	208	44	27	104	11	20	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0002	1737	164	41	30	62	7	24	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0003	1737	1	1	0	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0004	1737	1	1	0	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0005	1737	1	0	0	1	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0006	1737	1	0	0	1	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0007	1737	1	1	0	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	c0008	1737	1	0	1	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZW10_chr11_113728187_113778692	1/0	c0001	2340	399	86	70	190	12	40	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0002	2340	5	0	0	5	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0003	2340	3	0	0	3	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0004	2340	2	2	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0005	2340	2	2	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0006	2340	1	0	0	0	0	1	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	c0007	2340	1	0	0	0	0	1	copy fasta	ZW10	chr11	113728187	113778692