Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACAN_chr15_88798436_88880353	0/0	c0193	7593	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	1/0	c0001	2223	272	52	40	147	8	24	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/1	c0002	2223	116	36	38	20	6	15	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0003	2223	29	0	0	26	0	3	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0004	2223	9	1	1	2	1	4	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0005	2223	3	3	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0006	2223	2	0	0	2	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0007	2223	2	0	0	2	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0008	2223	2	0	1	0	0	1	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0009	2223	2	2	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0010	2223	1	0	0	1	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0011	2223	1	0	0	0	1	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0012	2223	1	1	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0013	2223	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0014	2223	1	1	0	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0015	2223	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0016	2223	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0017	2223	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	c0018	2223	1	0	0	0	0	1	copy fasta	ACAP1	chr17	7331529	7356477
ACAP2_chr3_195269745_195448020	1/1	c0001	2337	277	76	50	105	10	34	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	c0002	2337	38	0	10	22	0	6	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	c0003	2337	4	4	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	c0004	2337	3	3	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	c0005	2337	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	c0006	2337	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP3_chr1_1287391_1312930	1/0	c0001	2505	237	70	42	75	15	34	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0002	2505	24	5	1	13	0	5	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0003	2505	6	0	0	6	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0004	2505	3	3	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0005	2505	3	0	0	3	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0006	2505	3	0	3	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0007	2505	2	1	1	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0008	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0009	2505	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0010	2505	1	0	1	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0011	2505	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0012	2505	1	0	1	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0013	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0014	2505	1	0	0	0	0	1	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0015	2505	1	0	0	0	1	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0016	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0017	2505	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0018	2505	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0019	2505	1	0	1	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0020	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0021	2505	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0022	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0023	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	c0024	2505	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAT1_chr11_108116567_108152603	1/1	c0001	1284	198	54	30	92	7	13	copy fasta	ACAT1	chr11	108116567	108152603