Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACP7_chr19_39079368_39116493	0/0	c0017	1317	1	0	0	0	0	1	copy fasta	ACP7	chr19	39079368	39116493
ACP7_chr19_39079368_39116493	0/0	c0018	1317	1	0	0	1	0	0	copy fasta	ACP7	chr19	39079368	39116493
ACRBP_chr12_6633075_6652432	1/1	c0001	1632	388	78	74	170	16	48	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0002	1632	8	7	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0003	1632	8	0	0	8	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0004	1632	7	0	0	7	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0005	1632	4	3	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0006	1632	2	0	0	2	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0007	1632	1	0	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0008	1632	1	0	0	1	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0009	1632	1	1	0	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0010	1632	1	1	0	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRBP_chr12_6633075_6652432	0/0	c0011	1632	1	0	1	0	0	0	copy fasta	ACRBP	chr12	6633075	6652432
ACRV1_chr11_125666522_125685847	1/1	c0001	798	394	74	67	203	15	33	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0002	798	21	13	4	0	1	3	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0003	798	3	0	0	3	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0004	798	2	0	1	0	0	1	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0005	798	1	1	0	0	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0006	798	1	1	0	0	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0007	798	1	0	0	0	0	1	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0008	798	1	1	0	0	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0009	798	1	0	0	1	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	c0010	798	1	0	0	1	0	0	copy fasta	ACRV1	chr11	125666522	125685847
ACR_chr22_50733204_50750339	0/0	c0001	1266	316	60	56	157	6	37	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	1/1	c0002	1266	102	26	23	36	8	7	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0003	1266	24	9	2	6	4	3	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0004	1260	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0005	1266	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0006	1266	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0007	1266	1	0	0	0	0	1	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0010	1266	1	0	1	0	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0011	1266	1	1	0	0	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0013	1266	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0014	1266	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0015	1266	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	c0016	1266	1	1	0	0	0	0	copy fasta	ACR	chr22	50733204	50750339
ACSBG1_chr15_78162468_78239565	1/0	c0001	2175	155	22	29	80	6	17	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/1	c0002	2175	70	34	20	2	3	10	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0003	2175	48	2	7	37	0	2	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0004	2175	26	12	2	12	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0005	2175	23	3	4	8	1	7	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0006	2175	5	4	0	0	0	1	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0007	2175	4	4	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0008	2175	3	0	0	3	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0009	2175	2	0	0	2	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0010	2175	2	2	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	c0011	2175	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565