JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDK20_chr9_87961441_87979533	0/0	c0007	1041	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0008	1041	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0010	1041	1	0	0	1	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK2AP1_chr12_123255976_123276856	1/1	c0001	348	316	79	62	115	18	40	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	c0002	348	9	9	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	c0003	348	1	1	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	c0004	348	1	1	0	0	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP1_chr12_123255976_123276856	0/0	c0005	348	1	0	0	1	0	0	copy fasta	CDK2AP1	chr12	123255976	123276856
CDK2AP2_chr11_67501497_67513162	1/1	c0001	381	314	92	58	110	18	34	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2AP2_chr11_67501497_67513162	0/0	c0002	381	2	0	2	0	0	0	copy fasta	CDK2AP2	chr11	67501497	67513162
CDK2_chr12_55961830_55977789	1/1	c0001	897	368	67	80	164	16	39	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	c0002	897	27	16	6	0	2	3	copy fasta	CDK2	chr12	55961830	55977789
CDK2_chr12_55961830_55977789	0/0	c0003	897	15	15	0	0	0	0	copy fasta	CDK2	chr12	55961830	55977789
CDK3_chr17_75995855_76010998	1/1	c0001	918	380	96	80	147	16	39	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	c0002	918	6	0	0	6	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	c0003	918	2	0	0	0	0	2	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	c0004	918	1	0	0	0	0	1	copy fasta	CDK3	chr17	75995855	76010998
CDK3_chr17_75995855_76010998	0/0	c0005	918	1	0	0	1	0	0	copy fasta	CDK3	chr17	75995855	76010998
CDK4_chr12_57742727_57757310	1/1	c0001	912	362	88	74	138	18	42	copy fasta	CDK4	chr12	57742727	57757310
CDK4_chr12_57742727_57757310	0/0	c0002	912	2	2	0	0	0	0	copy fasta	CDK4	chr12	57742727	57757310
CDK5R1_chr17_32481993_32496253	1/1	c0001	924	402	95	82	163	10	50	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	c0002	924	2	0	0	2	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	c0003	924	1	1	0	0	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R1_chr17_32481993_32496253	0/0	c0004	924	1	0	0	1	0	0	copy fasta	CDK5R1	chr17	32481993	32496253
CDK5R2_chr2_218954666_218967155	1/1	c0001	1104	369	94	50	178	6	39	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0002	1104	10	0	4	3	0	3	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0003	1104	4	0	4	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0004	1104	2	2	0	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0005	1104	1	0	1	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5R2_chr2_218954666_218967155	0/0	c0007	1104	1	0	1	0	0	0	copy fasta	CDK5R2	chr2	218954666	218967155
CDK5RAP1_chr20_33353839_33406519	0/1	c0001	1764	192	34	36	90	6	25	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	1/0	c0002	1764	149	46	21	62	6	13	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0003	1764	4	3	1	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0004	1764	2	2	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0005	1764	2	0	2	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0006	1764	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0007	1764	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0008	1764	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0009	1764	1	1	0	0	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0010	1764	1	0	0	0	0	1	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0011	1764	1	0	0	0	0	1	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0012	1764	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0013	1764	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP1_chr20_33353839_33406519	0/0	c0014	1764	1	0	0	1	0	0	copy fasta	CDK5RAP1	chr20	33353839	33406519
CDK5RAP2_chr9_120383875_120585167	0/0	c0001	5682	101	23	22	43	3	10	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0002	5682	40	1	8	29	0	2	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0003	5682	20	17	2	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167