JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CELF3_chr1_151695058_151721803	1/1	c0001	1398	421	90	66	202	16	45	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0002	1407	3	3	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0003	1401	2	2	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0004	1398	1	0	0	0	0	1	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0005	1398	1	0	0	0	0	1	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0007	1398	1	0	0	0	0	1	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	c0009	1398	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF4_chr18_37238040_37570798	1/1	c0001	1461	138	59	27	30	1	19	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	c0002	1461	45	14	9	12	3	7	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	c0003	1461	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF5_chr19_3219661_3302076	1/1	c0001	1458	204	57	46	64	5	30	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0002	1458	37	6	12	10	3	6	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0003	1458	13	3	4	0	2	4	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0004	1458	2	2	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0005	1458	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0006	1458	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0007	1458	1	0	0	0	0	1	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0008	1458	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0009	1458	1	0	0	0	0	1	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	c0010	1458	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF6_chr15_72279727_72325157	1/1	c0001	1446	294	83	48	136	7	18	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	c0002	1446	2	2	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	c0003	1446	1	0	0	0	1	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	c0004	1446	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	c0005	1446	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	c0006	1446	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELSR1_chr22_46356174_46542620	0/0	c0001	9060	26	1	5	14	2	4	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0002	9060	5	0	2	1	1	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0003	9060	3	0	0	1	0	2	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0004	9060	2	0	0	0	1	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0005	9060	2	0	1	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0006	9060	2	1	0	1	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0007	9081	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0008	9060	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	1/0	c0009	9060	1	0	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0010	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0011	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0012	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0013	9060	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/1	c0014	9060	1	0	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0015	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0016	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0017	9060	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0018	9048	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0019	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0020	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0021	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	c0022	9060	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620