JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
CEL_chr9_133056981_133076861	0/0	c0044	2098	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0045	2097	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0046	2098	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0047	2198	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0048	22658	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0049	2229	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0050	2231	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0051	2196	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0052	2229	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0053	1999	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0054	2236	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0055	2237	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0056	2201	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0057	2200	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0058	2234	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0059	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0060	2235	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0061	2199	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0062	2235	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0063	2238	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0064	2201	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0065	2234	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0066	2200	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0067	2233	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0068	2233	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0069	2234	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0070	2268	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0071	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0072	2367	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0073	2134	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0074	2233	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0075	2232	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0076	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0077	2267	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0078	2098	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0079	2098	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0080	2130	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0081	2168	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0082	2236	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0083	2200	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0084	2231	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0085	2166	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0086	2167	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0087	2166	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0088	2165	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0089	2200	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0090	2233	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0091	2233	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0092	2199	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0093	2235	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861