JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
CEL_chr9_133056981_133076861	0/0	c0094	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0095	2231	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0096	2233	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0097	2232	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0098	2167	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0099	2234	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0100	2235	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0101	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0102	2232	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0103	2199	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0104	2198	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0105	2232	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0106	2232	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0107	2233	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0108	2232	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0109	2231	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0110	2163	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0111	2131	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0112	22700	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0113	2234	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0114	2166	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0115	2234	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0116	2199	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0117	2231	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0118	2231	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0119	2263	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0120	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0121	22767	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0122	2332	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0123	2230	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0124	2266	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0125	2032	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0126	2166	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0127	22557	1	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0128	22555	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0129	22587	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0130	2164	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0131	2164	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0132	22555	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0133	22556	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0134	22556	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0135	22521	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0136	2164	1	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0137	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0138	2199	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0139	2266	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0140	2233	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0141	2231	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0142	2166	1	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	c0143	2232	1	0	0	1	0	copy fasta	CEL	chr9	133056981	133076861