Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTRT3_chr3_169761921_169774561	0/0	c0003	1119	16	13	2	0	0	1	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0004	1119	4	4	0	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0005	1119	2	0	2	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0006	1119	2	0	0	0	0	2	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0008	1119	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0009	1090	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0010	1119	1	1	0	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACVR1B_chr12_51946699_52002078	1/1	c0001	1518	307	74	58	133	10	30	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0002	1518	5	5	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0003	1518	3	3	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0004	1518	3	3	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0005	1518	2	2	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0006	1518	2	2	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1C_chr2_157521767_157633864	1/1	c0001	1482	75	18	17	22	5	11	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0002	1482	72	19	10	25	9	9	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0003	1482	48	36	12	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0004	1482	7	6	1	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0005	1482	3	3	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0006	1482	2	0	0	0	2	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0007	1482	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0008	1482	2	2	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0010	1482	1	0	0	1	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0012	1482	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1C_chr2_157521767_157633864	0/0	c0013	1482	1	1	0	0	0	0	copy fasta	ACVR1C	chr2	157521767	157633864
ACVR1_chr2_157731446_157881330	0/1	c0001	1530	71	5	11	40	5	9	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	c0002	1530	67	44	5	7	1	10	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	1/0	c0003	1530	16	14	0	0	0	1	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	c0004	1530	7	7	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	c0005	1530	7	2	2	3	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	c0006	1530	6	6	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR2A_chr2_147840029_147935822	1/1	c0001	1542	195	48	30	83	8	24	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0002	1542	135	21	32	60	6	16	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0003	1542	2	0	2	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0004	1542	2	2	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0005	1542	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0006	1542	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0007	1542	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	c0008	1542	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2B_chr3_38448890_38498142	1/0	c0001	1539	229	58	43	104	5	18	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/1	c0002	1539	118	10	17	62	7	21	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	c0003	1539	57	16	8	28	0	5	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	c0004	1539	4	4	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	c0005	1539	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVRL1_chr12_51902504_51928361	1/1	c0001	1512	396	62	71	203	14	44	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0002	1512	21	18	3	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361