Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACVRL1_chr12_51902504_51928361	0/0	c0003	1512	10	8	2	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0004	1512	3	3	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0006	1512	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0007	1512	1	0	0	0	0	1	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0009	1512	1	0	0	1	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0010	1512	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	c0011	1512	1	0	0	0	0	1	copy fasta	ACVRL1	chr12	51902504	51928361
ACY1_chr3_51978535_51994197	1/1	c0001	1227	326	84	59	123	14	44	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0002	1227	3	3	0	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0003	1227	2	0	0	2	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0004	1227	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0005	1227	1	0	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0006	1227	1	1	0	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0007	1227	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0008	1227	1	0	0	1	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0009	1227	1	0	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	c0010	1227	1	0	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY3_chr11_67637555_67655730	0/1	c0001	960	264	45	50	108	17	43	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	1/0	c0002	960	77	44	12	19	0	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0003	960	35	0	4	29	0	2	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0004	960	9	0	0	9	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0005	960	6	6	0	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0006	960	1	0	0	0	0	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0007	960	1	0	0	0	0	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0008	960	1	0	0	0	1	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0009	960	1	1	0	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	c0010	994	1	0	0	1	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACYP1_chr14_75048243_75069024	1/1	c0001	300	322	90	62	108	14	46	copy fasta	ACYP1	chr14	75048243	75069024
ACYP2_chr2_53966113_54310300	1/0	c0001	519	158	45	35	54	10	13	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/1	c0002	519	97	37	11	35	5	8	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	c0003	519	13	0	5	4	1	3	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	c0004	519	2	2	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	c0005	519	1	0	1	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	c0006	519	1	0	0	1	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ADA2_chr22_17173790_17224435	1/0	c0001	1536	122	15	17	74	2	13	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0002	1536	58	28	12	17	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0003	1536	52	8	14	18	3	9	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0004	1536	51	2	6	34	0	9	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0005	1536	31	13	7	6	2	3	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0006	1536	26	10	5	2	4	5	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0007	1536	20	1	3	16	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/1	c0008	1536	17	2	9	1	2	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0009	1536	9	8	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0010	1536	7	0	2	3	0	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0011	1536	5	2	2	0	1	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0012	1536	2	2	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0013	1536	2	2	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0014	1536	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435