Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM15_chr1_155046316_155067775	0/0	c0013	2592	2	2	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0014	2592	1	0	0	0	1	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0015	2592	1	0	0	1	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0016	2592	1	0	0	0	0	1	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0017	2592	1	1	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0018	2592	1	0	0	1	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0019	2592	1	0	1	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM15_chr1_155046316_155067775	0/0	c0020	2592	1	1	0	0	0	0	copy fasta	ADAM15	chr1	155046316	155067775
ADAM17_chr2_9483486_9560830	0/1	c0001	2475	118	53	28	11	8	17	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	1/0	c0002	2475	91	25	22	24	5	14	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0003	2475	13	10	3	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0004	2475	2	2	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0005	2475	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0006	2475	1	0	0	0	1	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0007	2475	1	0	0	1	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0008	2475	1	0	0	0	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0009	2475	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0010	2475	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0011	2475	1	1	0	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0012	2475	1	0	1	0	0	0	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0013	2475	1	0	0	0	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM17_chr2_9483486_9560830	0/0	c0014	2475	1	0	0	0	0	1	copy fasta	ADAM17	chr2	9483486	9560830
ADAM18_chr8_39579568_39735065	0/0	c0001	2220	148	18	32	84	4	10	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/1	c0002	2220	145	32	38	44	4	26	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0003	2220	12	10	1	1	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0004	2220	10	9	0	0	0	1	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0005	2220	5	5	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0006	2220	3	3	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0007	2220	2	2	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0008	2220	2	2	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0009	2220	2	0	0	2	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0010	2220	2	2	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0011	2220	2	2	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0012	2220	2	0	0	2	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0013	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0015	2220	1	0	1	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0016	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0017	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0018	2220	1	0	0	0	0	1	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0019	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0020	2220	1	0	0	1	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0021	2220	1	0	1	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0022	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0023	2220	1	0	1	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM18_chr8_39579568_39735065	0/0	c0024	2220	1	1	0	0	0	0	copy fasta	ADAM18	chr8	39579568	39735065
ADAM19_chr5_157472304_157580775	1/1	c0001	2757	132	8	30	77	2	13	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0002	2757	101	33	21	24	6	17	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0003	2757	17	5	6	1	3	2	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0004	2757	12	11	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775