Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACVR2B_chr3_38448890_38498142	0/0	t0213	10246	1	0	0	1	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0214	10221	1	0	1	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0215	10220	1	1	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0216	10220	1	0	1	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0217	10204	1	0	0	0	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0218	10203	1	0	0	0	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0219	10213	1	1	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0220	10214	1	1	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVRL1_chr12_51902504_51928361	1/0	t0001	2666	130	27	36	52	4	10	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/1	t0002	2666	114	15	23	45	6	24	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0003	2666	61	0	2	49	3	7	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0004	2666	37	6	4	25	0	2	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0005	2666	22	0	0	22	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0006	2667	10	10	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0007	2666	7	0	0	7	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0008	2666	6	5	1	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0009	2667	6	6	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0010	2666	5	0	2	0	1	2	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0011	2667	5	2	3	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0012	2666	4	4	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0013	2666	3	3	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0014	2666	3	3	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0015	2666	3	2	1	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0016	2667	2	2	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0017	2666	2	0	2	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0018	2666	2	0	0	2	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0019	2666	2	2	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0020	2666	1	0	0	0	0	1	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0021	2667	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0022	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0023	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0024	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0025	2666	1	0	1	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0026	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0027	2666	1	0	1	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0028	2667	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0029	2667	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0030	2666	1	0	0	1	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0031	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0032	2666	1	1	0	0	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACVRL1_chr12_51902504_51928361	0/0	t0033	2666	1	0	0	1	0	0	copy fasta	ACVRL1	chr12	51902504	51928361
ACY1_chr3_51978535_51994197	1/1	t0001	196	331	83	60	128	14	44	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	t0002	196	6	5	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY1_chr3_51978535_51994197	0/0	t0003	196	1	0	1	0	0	0	copy fasta	ACY1	chr3	51978535	51994197
ACY3_chr11_67637555_67655730	0/1	t0001	412	264	51	47	106	16	43	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0002	412	65	17	8	38	0	2	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	1/0	t0003	412	28	8	8	10	0	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0004	412	19	14	1	1	2	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0005	412	9	0	0	9	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0006	412	4	3	1	0	0	0	copy fasta	ACY3	chr11	67637555	67655730