Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAM19_chr5_157472304_157580775	0/0	t0038	3724	1	0	0	0	0	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0039	3723	1	0	0	0	0	1	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0040	3723	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0041	3725	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0042	3726	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0043	3726	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0044	3726	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0045	3725	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0046	3724	1	0	0	1	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	t0047	3726	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM20_chr14_70517358_70540004	1/1	t0001	604	262	62	60	100	10	28	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	t0002	604	101	9	8	76	1	7	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	t0003	604	27	9	4	13	1	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	t0004	604	9	6	0	0	0	3	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	t0005	604	1	0	0	1	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM21_chr14_70447174_70464905	0/0	t0001	479	163	34	30	82	4	13	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	t0002	479	134	31	14	79	1	9	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	1/1	t0003	479	112	19	23	47	8	13	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	t0004	479	8	0	0	0	0	8	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	t0005	479	6	0	2	0	3	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	t0006	479	2	1	1	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	t0007	479	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM22_chr7_87929251_88207889	1/1	t0001	6614	111	33	21	39	8	8	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0002	6614	55	8	10	28	4	5	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0003	6614	10	6	1	1	0	2	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0004	6615	10	0	3	7	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0005	6614	5	5	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0006	6614	3	3	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0007	6614	3	3	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0008	6613	3	0	2	0	0	1	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0009	6614	3	3	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0010	6614	2	2	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0011	6615	2	1	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0012	6614	2	0	0	0	0	2	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0013	6614	2	0	0	2	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0014	6614	2	2	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0015	6614	2	2	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0016	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0017	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0018	6614	1	0	0	0	0	1	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0019	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0020	6614	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0021	6614	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0022	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0023	6614	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0024	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0025	6614	1	0	0	0	0	1	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0026	6614	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0027	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	t0028	6614	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889