Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS10_chr19_8575240_8615715	0/0	t0011	940	2	0	1	0	1	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0012	939	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0013	942	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0014	940	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0015	940	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0016	939	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0017	939	1	0	0	0	0	1	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0018	940	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0019	940	1	1	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0020	939	1	0	0	1	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0021	939	1	0	1	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	t0022	939	1	0	0	0	1	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS12_chr5_33518535_33896990	0/0	t0001	3788	75	21	15	31	3	5	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	1/1	t0002	3788	41	4	9	21	2	3	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0003	3788	30	8	5	11	1	5	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0004	3788	16	8	0	6	0	2	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0005	3788	11	2	1	5	1	2	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0006	3788	7	7	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0007	3788	7	6	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0008	3788	5	5	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0009	3787	4	3	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0010	3794	3	3	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0011	3788	3	0	0	3	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0012	3788	3	3	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0013	3788	2	2	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0014	3794	2	2	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0015	3788	2	2	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0016	3788	2	1	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0017	3788	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0018	3788	1	0	0	0	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0019	3788	1	0	1	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0020	3788	1	0	0	0	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0021	3788	1	0	0	1	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0022	3788	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0023	3788	1	0	0	0	0	1	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0024	3788	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0025	3788	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0026	3788	1	0	0	0	1	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS12_chr5_33518535_33896990	0/0	t0027	3788	1	1	0	0	0	0	copy fasta	ADAMTS12	chr5	33518535	33896990
ADAMTS13_chr9_133417367_133464386	1/1	t0001	284	356	88	73	138	16	39	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	0/0	t0002	284	4	3	1	0	0	0	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	0/0	t0003	284	1	1	0	0	0	0	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	0/0	t0004	284	1	1	0	0	0	0	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	0/0	t0005	284	1	1	0	0	0	0	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS13_chr9_133417367_133464386	0/0	t0006	284	1	0	0	0	0	1	copy fasta	ADAMTS13	chr9	133417367	133464386
ADAMTS14_chr10_70667506_70767441	0/0	t0001	1885	60	6	8	40	0	6	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	t0002	1886	51	7	11	29	2	2	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	t0003	1886	37	9	4	15	2	7	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	t0004	1885	26	2	7	13	2	2	copy fasta	ADAMTS14	chr10	70667506	70767441
ADAMTS14_chr10_70667506_70767441	0/0	t0005	1876	18	1	4	11	1	1	copy fasta	ADAMTS14	chr10	70667506	70767441