Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS16_chr5_5135330_5325304	0/0	t0006	1306	10	9	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0007	1307	10	0	1	7	1	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0008	1306	8	8	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0009	1306	8	8	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0010	1306	7	2	3	2	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0011	1306	7	1	0	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0012	1306	6	1	4	0	1	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0013	1306	6	0	5	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	1/0	t0014	1305	5	2	0	0	0	2	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0015	1306	4	4	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0016	1305	3	3	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0017	1306	3	0	2	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0018	1306	3	3	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0019	1307	2	0	1	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0020	1306	2	2	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0021	1307	2	0	0	2	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0022	1306	2	1	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0023	1306	2	2	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0024	1306	2	2	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0025	1306	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0026	1307	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0027	1306	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0028	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0029	1306	1	0	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0030	1306	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0031	1306	1	0	0	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0032	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0033	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0034	1307	1	0	0	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0035	1306	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0036	1306	1	0	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0037	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0038	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0039	1306	1	0	0	1	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0040	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0041	1306	1	0	0	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	t0042	1306	1	1	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS17_chr15_99966437_100346975	0/0	t0001	3042	47	11	10	17	4	5	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0002	3046	22	0	3	16	2	1	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0003	3041	18	3	3	8	1	3	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/1	t0004	3046	12	0	0	8	1	2	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0005	3046	12	3	3	0	2	4	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0006	3042	9	4	1	0	0	4	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0007	3046	7	1	3	0	1	2	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0008	3043	5	4	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0009	3045	4	0	4	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0010	3045	4	4	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0011	3046	4	0	3	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0012	3046	4	4	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	t0013	3041	3	2	0	0	0	1	copy fasta	ADAMTS17	chr15	99966437	100346975