Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS18_chr16_77277128_77440034	0/0	t0040	2172	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0041	2168	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0042	2168	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0043	2168	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0044	2168	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0045	2171	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0046	2171	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0047	2170	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0048	2168	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0049	2168	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0050	2168	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0051	2170	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0052	2172	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0053	2172	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0054	2172	1	0	0	0	1	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	t0055	2170	1	0	0	0	1	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS19_chr5_129455298_129743683	0/0	t0001	1560	144	36	27	62	0	19	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0002	1560	47	21	9	11	0	6	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	1/1	t0003	1560	7	1	1	0	0	3	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0004	1560	5	5	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0005	1560	4	4	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0006	1560	4	0	0	4	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0007	1560	3	3	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0008	1560	2	2	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0009	1560	2	1	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0010	1560	2	2	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0011	1560	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0012	1560	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0013	1560	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0014	1560	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0015	1560	1	0	0	1	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	t0016	1560	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS1_chr21_26830755_26850409	0/0	t0001	2280	105	35	15	35	5	15	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0002	2280	64	0	11	52	1	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0003	2280	47	0	3	41	1	2	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	1/0	t0004	2280	40	1	3	29	2	4	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/1	t0005	2279	27	0	13	4	4	5	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0006	2279	16	1	9	3	0	3	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0007	2280	14	0	0	13	0	1	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0008	2280	12	7	3	0	0	2	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0009	2280	10	1	5	1	1	2	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0010	2280	8	0	0	8	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0011	2280	8	7	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0012	2280	8	3	1	1	0	3	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0013	2280	7	0	0	7	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0014	2280	6	5	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0015	2280	6	0	0	3	0	3	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0016	2280	5	4	0	0	0	1	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0017	2280	5	0	0	5	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0018	2284	4	4	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409