Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS1_chr21_26830755_26850409	0/0	t0069	2279	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0070	2280	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0071	2280	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0072	2279	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0073	2280	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0074	2280	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0075	2279	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0076	2280	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0077	2280	1	0	0	0	1	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0078	2280	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	t0079	2280	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS20_chr12_43348866_43557203	0/1	t0001	626	264	57	47	120	10	29	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	1/0	t0002	626	29	20	1	6	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	t0003	626	6	6	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	t0004	626	4	4	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	t0005	626	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	t0006	626	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	t0007	626	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS2_chr5_179105853_179350461	0/0	t0001	3148	85	26	19	32	1	7	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	1/1	t0002	3148	53	12	14	14	3	8	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0003	3148	47	1	11	22	0	13	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0004	3148	41	21	2	16	0	2	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0005	3148	5	0	3	0	2	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0006	3149	5	0	0	5	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0007	3139	4	4	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0008	3148	4	4	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0009	3148	3	0	2	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0010	3148	3	0	2	0	1	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0011	3148	3	3	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0012	3148	3	3	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0013	3148	3	2	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0014	3148	2	2	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0015	3148	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0016	3148	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0017	3148	1	0	0	0	1	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0018	3148	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0019	3148	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0020	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0021	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0022	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0023	3148	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0024	3148	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0025	3148	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0026	3148	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0027	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0028	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	t0029	3148	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS3_chr4_72275969_72574221	0/1	t0001	2628	83	29	18	24	1	10	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0002	2627	29	7	6	15	1	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	t0003	2626	14	3	2	7	0	2	copy fasta	ADAMTS3	chr4	72275969	72574221