Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS5_chr21_26912922_26972088	0/0	t0110	6829	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0111	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0112	6829	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0113	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0114	6829	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0115	6830	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0116	6831	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0117	6828	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0118	6827	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0119	6828	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0120	6830	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0121	6830	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0122	6829	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0123	6829	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0124	6830	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0125	6830	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0126	6830	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0127	6831	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0128	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0129	6831	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0130	6830	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0131	6827	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0132	6830	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0133	6831	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0134	6832	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0135	6831	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0136	6832	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0137	6830	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0138	6829	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0139	6829	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0140	6832	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0141	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0142	6832	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0143	6826	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0144	6834	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0145	6829	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0146	6829	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0147	6829	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0148	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0149	6828	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0150	6828	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	t0151	6829	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS6_chr5_65143738_65486920	1/1	t0001	3956	117	21	23	50	6	15	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0002	3956	39	37	2	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0003	3956	14	0	6	8	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0004	3956	11	9	2	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0005	3956	6	6	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0006	3956	3	1	2	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0007	3956	3	0	2	0	0	1	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0008	3956	2	0	0	0	0	2	copy fasta	ADAMTS6	chr5	65143738	65486920