Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS9_chr3_64510654_64693000	0/0	t0013	1817	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0014	1817	2	1	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0015	1817	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0016	1817	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0017	1817	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0018	1817	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0019	1817	1	0	0	0	1	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0020	1817	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0021	1817	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTSL1_chr9_18469153_18915950	1/0	t0001	2483	57	1	12	32	0	11	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0002	2491	52	14	14	17	2	5	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0003	2483	30	19	8	2	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/1	t0004	2494	27	5	3	13	0	5	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0005	2491	5	2	3	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0006	2494	5	0	1	4	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0007	2483	5	2	0	1	2	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0008	2494	3	0	0	0	1	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0009	2491	3	0	3	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0010	2494	2	2	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0011	2491	2	2	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0012	2486	2	0	0	2	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0013	2483	2	2	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0014	2483	2	2	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0015	2483	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0016	2494	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0017	2483	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0018	2491	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0019	2491	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0020	2483	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0021	2481	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0022	2483	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0023	2494	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0024	2491	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0025	2491	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0026	2494	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0027	2491	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0028	2491	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0029	2494	1	0	0	0	1	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0030	2483	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0031	2491	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0032	2491	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0033	2491	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0034	2483	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	t0035	2483	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL2_chr9_133529704_133580519	0/0	t0001	1020	52	27	12	3	5	5	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/1	t0002	1019	40	1	4	21	3	10	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	1/0	t0003	1020	38	5	7	16	4	5	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0004	1020	6	6	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0005	1019	4	3	0	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0006	1020	2	1	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519