Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTSL2_chr9_133529704_133580519	0/0	t0007	1020	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0008	1019	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0009	1020	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0010	1020	1	0	0	1	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0011	1019	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0012	1019	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0013	1020	1	0	0	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0014	1020	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0015	1020	1	0	0	1	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	t0016	1020	1	1	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL3_chr15_83649123_84044842	1/1	t0001	2224	239	70	30	106	12	19	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0002	2224	21	0	9	4	3	5	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0003	2224	3	0	0	3	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0004	2224	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0005	2224	1	0	0	0	1	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0006	2224	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0007	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0008	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0009	2224	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0010	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0011	2224	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0012	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0013	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	t0014	2224	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL4_chr1_150544408_150565933	1/1	t0001	988	417	81	79	194	16	45	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0002	988	10	10	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0003	988	3	3	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0004	988	2	2	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0005	988	2	1	1	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0006	988	2	0	0	0	0	2	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0007	988	1	0	0	0	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0008	988	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0009	988	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	t0010	988	1	1	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL5_chr19_1500022_1518019	1/1	t0001	1268	116	25	30	35	7	17	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0002	1269	82	23	20	24	5	10	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0003	1269	43	2	4	34	1	2	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0004	1268	26	0	1	19	1	5	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0005	1268	21	19	2	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0006	1268	14	1	4	7	2	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0007	1268	6	0	0	6	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0008	1268	4	3	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0009	1269	4	0	3	0	1	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0010	1267	3	0	2	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0011	1269	2	0	0	2	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0012	1269	2	2	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0013	1268	2	0	1	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0014	1269	2	2	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0015	1269	2	1	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0016	1269	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019