Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCY7_chr16_50261551_50323135	1/0	t0002	3029	72	19	5	42	3	2	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0003	3029	60	2	18	24	6	10	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0004	3033	31	11	8	2	2	8	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0005	3029	26	1	9	8	1	7	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0006	3025	17	1	10	0	2	4	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0007	3033	8	6	1	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0008	3031	5	5	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0009	3028	4	4	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0010	3029	4	4	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0011	3025	4	0	4	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0012	3028	3	3	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0013	3027	2	2	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0014	3033	2	2	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/1	t0015	3029	2	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0016	3025	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0017	3025	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0018	3029	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0019	3015	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0020	3027	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0021	3027	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0022	3025	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0023	3025	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0024	3029	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0025	3033	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0026	3029	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	t0027	3029	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY8_chr8_130775301_131045909	0/0	t0001	667	83	12	13	41	4	13	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0002	668	53	23	18	9	0	3	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	1/0	t0003	666	52	12	8	25	2	4	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/1	t0004	669	43	15	8	13	4	2	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0005	669	4	0	4	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0006	668	2	2	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0007	666	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0008	669	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0009	667	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0010	669	1	0	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0011	669	1	0	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0012	669	1	0	0	0	0	1	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0013	666	1	0	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0014	667	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	t0015	666	1	0	0	0	0	1	copy fasta	ADCY8	chr8	130775301	131045909
ADCY9_chr16_3957653_4121442	0/0	t0001	3896	47	5	12	17	6	7	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0002	3918	17	4	1	7	1	4	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0003	3914	15	0	6	8	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0004	3916	15	2	3	5	0	5	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0005	3912	13	0	4	9	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0006	3917	8	2	0	6	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0007	3910	7	0	0	6	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0008	3915	7	2	0	5	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	t0009	3898	6	0	1	5	0	0	copy fasta	ADCY9	chr16	3957653	4121442