Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRE2_chr19_14727392_14783560	0/0	t0048	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0049	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0050	4319	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0051	4319	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0052	4319	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0053	4319	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0054	4319	1	0	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE3_chr19_14614117_14679844	1/1	t0001	391	350	81	64	149	15	39	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	t0002	391	21	9	6	1	1	4	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	t0003	391	1	0	0	0	0	1	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE5_chr19_14376444_14413723	1/0	t0001	683	263	39	51	126	12	34	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/1	t0002	683	90	31	26	18	4	10	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0003	683	5	5	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0004	683	4	4	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0005	683	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0006	683	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0007	683	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0008	683	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0009	683	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0010	683	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0011	683	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0012	683	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	t0013	683	1	1	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRF1_chr6_46992708_47047332	1/0	t0001	2700	146	12	28	86	4	15	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0002	2700	58	14	11	22	3	8	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0003	2699	44	10	7	27	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0004	2700	32	6	5	14	2	5	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0005	2700	21	3	1	15	0	2	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0006	2699	16	9	1	5	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0007	2700	11	4	5	0	1	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0008	2700	6	4	1	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0009	2700	5	5	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0010	2700	4	4	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0011	2700	4	3	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0012	2700	4	0	0	4	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0013	2700	3	2	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0014	2699	3	0	0	3	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0015	2700	3	0	3	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0016	2700	3	0	0	3	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/1	t0017	2699	2	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0018	2700	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0019	2700	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0020	2700	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0021	2700	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0022	2699	2	0	2	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0023	2700	2	2	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0024	2700	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0025	2700	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0026	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0027	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332