Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRG1_chr16_57623630_57670567	0/0	t0029	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0030	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0031	2195	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0032	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0033	2194	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0034	2195	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0035	2195	1	0	1	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0036	2194	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0037	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0038	2195	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0039	2194	1	0	1	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0040	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0041	2194	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0042	2195	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0043	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG2_chrX_18984307_19127468	1/1	t0001	1630	154	35	26	70	4	17	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0002	1630	8	7	1	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0003	1615	5	5	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0004	1630	5	5	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0005	1630	5	5	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0006	1630	2	2	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0007	1630	2	0	0	2	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0008	1630	1	0	0	1	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0009	1630	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0010	1630	1	0	0	0	0	1	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0011	1630	1	0	0	0	1	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0012	1630	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0013	1636	1	0	0	1	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	t0014	1630	1	0	0	1	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG3_chr16_57663306_57694378	1/1	t0001	960	154	19	30	77	8	18	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0002	960	74	7	19	40	0	8	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0003	960	68	28	15	16	1	8	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0004	960	34	5	0	27	0	2	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0005	960	33	1	9	9	5	9	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0006	960	33	0	0	32	0	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0007	960	10	9	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0008	960	8	8	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0009	960	8	7	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0010	960	6	0	3	0	3	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0011	960	4	3	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0012	960	3	3	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0013	960	3	3	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0014	960	2	2	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0015	960	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0016	960	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0017	960	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0018	960	1	0	0	0	0	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0019	960	1	0	0	0	0	1	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0020	960	1	0	0	0	1	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	t0021	960	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378