Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRL2_chr1_81795934_81998932	0/0	t0151	3024	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0152	3034	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	1/0	t0153	3023	1	0	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0154	3008	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0155	3023	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0156	2994	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	t0157	3023	1	1	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL3_chr4_61195326_62083335	0/1	t0001	9107	6	1	2	0	0	2	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0002	9107	3	1	1	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0003	9111	3	3	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0004	9107	3	3	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0005	9119	2	2	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0006	9123	2	2	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0007	9111	2	0	2	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0008	9108	2	1	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0009	9107	2	1	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0010	9104	2	2	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0011	9104	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0012	9119	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0013	9123	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0014	9120	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0015	9119	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0016	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0017	9114	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0018	9110	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0019	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0020	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0021	9104	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0022	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0023	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0024	9107	1	0	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0025	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0026	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0027	9107	1	0	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0028	9107	1	0	0	0	0	1	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0029	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0030	9108	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0031	9107	1	0	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0032	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0033	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0034	9107	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0035	9104	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0036	9111	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0037	9111	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0038	9104	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	1/0	t0039	9107	1	0	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0040	9111	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	t0041	9111	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL4_chr1_78884764_79011730	0/0	t0001	1467	278	61	62	115	9	31	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/1	t0002	1467	65	7	3	51	1	2	copy fasta	ADGRL4	chr1	78884764	79011730