Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADIRF_chr10_86963482_86975915	0/0	t0003	397	11	11	0	0	0	0	copy fasta	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	0/0	t0004	397	1	0	0	1	0	0	copy fasta	ADIRF	chr10	86963482	86975915
ADISSP_chr20_3748508_3772753	1/1	t0001	728	319	73	53	153	8	30	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0002	728	93	10	24	41	9	9	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0003	728	10	4	2	0	0	4	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0004	728	7	0	1	0	1	5	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0005	728	7	6	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0006	728	3	3	0	0	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0007	728	2	0	0	2	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0008	728	2	2	0	0	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0009	728	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0010	728	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	t0011	728	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADK_chr10_74146221_74714290	0/0	t0001	904	169	73	33	44	4	15	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	1/1	t0002	904	25	1	4	15	0	3	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	t0003	904	2	0	0	2	0	0	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	t0004	902	2	2	0	0	0	0	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	t0005	904	1	0	1	0	0	0	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	t0006	904	1	0	0	1	0	0	copy fasta	ADK	chr10	74146221	74714290
ADM2_chr22_50476543_50491437	0/0	t0001	3788	87	7	17	53	2	8	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0002	3789	69	1	10	49	1	8	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	1/0	t0003	3767	52	9	15	17	1	9	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0004	3788	14	14	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0005	3788	12	0	9	0	3	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0006	3788	10	9	1	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0007	3788	8	1	3	0	2	2	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0008	3788	8	8	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0009	3787	7	0	0	7	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0010	3789	7	0	1	5	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0011	3788	7	5	0	1	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0012	3788	6	2	1	2	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0013	3789	5	0	0	5	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0014	3789	5	0	0	5	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0015	3788	5	1	3	0	1	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0016	3788	5	0	0	4	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0017	3787	5	0	0	5	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0018	3788	4	0	0	4	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0019	3788	4	1	0	3	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0020	3788	3	3	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0021	3788	3	0	0	1	2	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0022	3766	3	0	0	0	0	3	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0023	3788	3	0	0	0	0	3	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0024	3789	3	3	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0025	3789	3	3	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0026	3789	3	0	2	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0027	3789	3	2	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0028	3788	2	0	1	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0029	3788	2	0	2	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0030	3788	2	0	0	2	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	t0031	3789	2	2	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437