Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADNP_chr20_50883918_50936437	0/0	t0085	3361	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0086	3364	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0087	3366	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0088	3366	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0089	3362	1	0	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0090	3364	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0091	3362	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0092	3362	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0093	3363	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0094	3364	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0095	3362	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0096	3362	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0097	3359	1	0	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0098	3363	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0099	3363	1	0	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0100	3359	1	1	0	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0101	3360	1	0	1	0	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADNP_chr20_50883918_50936437	0/0	t0102	3365	1	0	0	1	0	0	copy fasta	ADNP	chr20	50883918	50936437
ADORA1_chr1_203122726_203172405	0/1	t0001	1920	201	53	49	63	11	24	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0002	1920	74	16	6	49	0	3	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	1/0	t0003	1921	44	4	10	26	0	3	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0004	1920	33	3	3	17	2	8	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0005	1920	13	0	2	9	1	1	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0006	1920	12	12	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0007	1920	5	0	5	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0008	1884	4	4	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0009	1920	4	0	0	4	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0010	1920	3	0	0	3	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0011	1884	2	0	0	0	0	2	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0012	1920	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0013	1921	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0014	1921	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0015	1921	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0016	1920	1	1	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0017	1920	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0018	1920	1	1	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0019	1920	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0020	1920	1	0	0	1	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0021	1920	1	1	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0022	1921	1	0	1	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0023	1920	1	1	0	0	0	0	copy fasta	ADORA1	chr1	203122726	203172405
ADORA1_chr1_203122726_203172405	0/0	t0024	1920	1	0	0	0	0	1	copy fasta	ADORA1	chr1	203122726	203172405
ADORA2A_chr22_24422599_24447357	1/0	t0001	1291	224	64	30	99	12	18	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/1	t0002	1292	143	21	33	70	6	12	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0003	1291	9	8	1	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0004	1291	5	0	0	0	0	5	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0005	1292	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0006	1291	1	1	0	0	0	0	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0007	1291	1	0	0	0	0	1	copy fasta	ADORA2A	chr22	24422599	24447357
ADORA2A_chr22_24422599_24447357	0/0	t0008	1292	1	0	0	1	0	0	copy fasta	ADORA2A	chr22	24422599	24447357