Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFF2_chrX_148495617_149005663	0/0	t0002	9819	6	0	1	5	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0003	9823	5	0	0	5	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0004	9825	4	0	0	4	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/1	t0005	9816	4	0	0	1	1	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0006	9813	4	1	1	0	1	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0007	9828	3	0	0	2	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0008	9820	3	0	2	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0009	9814	3	1	0	0	0	2	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0010	9788	3	1	2	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0011	9809	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0012	9831	2	0	0	2	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0013	9829	2	0	0	2	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0014	9823	2	0	0	2	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0015	9820	2	0	0	2	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0016	9819	2	1	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0017	9819	2	0	1	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0018	9787	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0019	9814	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0020	9813	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0021	9813	2	0	1	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0022	9820	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0023	9812	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0024	9798	2	0	0	2	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0025	9790	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0026	9822	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0027	9789	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0028	9789	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0029	9777	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0030	9807	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0031	9809	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0032	9861	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0033	9852	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0034	9852	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0035	9841	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0036	9838	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0037	9837	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0038	9837	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0039	9812	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0040	9842	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0041	9836	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0042	9834	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0043	9832	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0044	9801	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0045	9832	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0046	9838	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0047	9838	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0048	9829	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0049	9828	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0050	9829	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0051	9825	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663