Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFF2_chrX_148495617_149005663	0/0	t0052	9828	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0053	9828	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0054	9829	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0055	9829	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0056	9828	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0057	9826	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0058	9819	1	0	0	0	1	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0059	9826	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0060	9825	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0061	9825	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0062	9825	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0063	9825	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0064	9822	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0065	9822	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0066	9822	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0067	9822	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0068	9822	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0069	9822	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0070	9822	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0071	9822	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0072	9797	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0073	9803	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0074	9817	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0075	9825	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0076	9820	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0077	9820	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0078	9819	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0079	9819	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0080	9823	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0081	9818	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0082	9819	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0083	9818	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0084	9814	1	0	0	0	1	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0085	9818	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0086	9817	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0087	9816	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0088	9818	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0089	9817	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0090	9816	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0091	9816	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0092	9821	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0093	9821	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0094	9821	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0095	9813	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0096	9810	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	1/0	t0097	9813	1	0	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0098	9813	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0099	9815	1	0	0	0	1	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0100	9813	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0101	9815	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663