Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFF2_chrX_148495617_149005663	0/0	t0102	9814	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0103	9813	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0104	9811	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0105	9785	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0106	9811	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0107	9815	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0108	9820	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0109	9809	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0110	9817	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0111	9818	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0112	9781	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0113	9813	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0114	9811	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0115	9810	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0116	9808	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0117	9807	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0118	9804	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0119	9806	1	0	0	0	0	1	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0120	9801	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0121	9801	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0122	9798	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	t0123	9779	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF3_chr2_99540419_100147590	1/0	t0001	6390	19	7	5	3	1	2	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0002	6385	11	1	8	0	1	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0003	6392	8	2	1	3	0	2	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0004	6378	8	6	2	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0005	6389	7	6	1	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0006	6385	6	3	0	0	1	2	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0007	6390	5	4	1	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0008	6390	4	4	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0009	6390	4	3	0	0	1	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0010	6389	2	2	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0011	6392	2	0	1	0	0	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0012	6392	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0013	6391	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0014	6390	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0015	6389	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0016	6379	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0017	6390	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0018	6391	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0019	6389	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0020	6378	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0021	6390	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0022	6385	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0023	6392	1	0	0	0	0	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0024	6390	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0025	6385	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0026	6385	1	0	1	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0027	6392	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	t0028	6392	1	0	0	1	0	0	copy fasta	AFF3	chr2	99540419	100147590