Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCB8_chr7_151023450_151052782	1/0	t0008	2500	5	0	1	0	2	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0009	2497	5	5	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0010	2500	2	0	1	0	1	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0011	2497	2	2	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0012	2497	2	2	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0013	2497	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0014	2500	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0015	2497	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0016	2500	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0017	2500	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0018	2500	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0019	2500	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0020	2500	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0021	2500	1	0	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0022	2500	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0023	2500	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0024	2500	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0025	2497	1	0	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0026	2497	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0027	2497	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0028	2497	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0029	2497	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0030	2497	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0031	2500	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0032	2497	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB9_chr12_122923992_122971463	1/1	t0001	1184	160	24	49	54	6	25	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0002	1184	61	12	3	38	0	8	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0003	1184	25	22	3	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0004	1184	14	14	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0005	1184	5	5	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0006	1184	2	1	1	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0007	1184	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0008	1184	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0009	1184	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0010	1184	1	0	0	0	0	1	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	t0011	1184	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCC10_chr6_43422541_43455427	1/1	t0001	565	309	64	66	125	10	42	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	t0002	565	24	24	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	t0003	565	7	7	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	t0004	583	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	t0005	565	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC11_chr16_48160773_48252539	0/1	t0001	2203	94	31	27	21	1	13	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0002	2203	13	12	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0003	2204	8	8	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0004	2203	7	1	2	3	1	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0005	2203	7	1	5	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0006	2203	6	6	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0007	2203	4	4	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0008	2203	4	3	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	t0009	2203	2	0	0	0	0	2	copy fasta	ABCC11	chr16	48160773	48252539