Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFM_chr4_73476745_73509001	0/0	t0002	198	2	1	1	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	t0003	198	2	1	1	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFP_chr4_73431221_73461174	0/0	t0001	597	191	44	25	95	10	17	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	1/1	t0002	597	188	48	46	62	8	22	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	t0003	597	7	0	0	6	0	1	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	t0004	597	2	1	1	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	t0005	597	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	t0006	597	1	0	0	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFTPH_chr2_64519328_64598005	1/1	t0001	1288	149	25	34	64	8	16	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0002	1293	52	17	1	32	1	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0003	1294	45	8	3	30	1	3	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0004	1291	42	14	5	16	0	7	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0005	1291	38	3	12	14	2	7	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0006	1289	9	3	0	4	0	2	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0007	1287	8	1	2	5	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0008	1293	5	5	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0009	1292	4	3	0	1	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0010	1295	3	1	0	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0011	1290	3	0	1	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0012	1288	3	0	0	3	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0013	1288	3	0	0	3	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0014	1290	2	2	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0015	1288	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0016	1288	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0017	1290	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0018	1288	1	0	0	1	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0019	1293	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	t0020	1288	1	0	0	1	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AGAP1_chr2_235489043_236136793	0/0	t0001	8316	17	7	5	4	0	1	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0002	8315	9	8	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0003	8313	5	5	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0004	8315	5	5	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0005	8314	4	1	0	1	0	2	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0006	8317	4	0	3	1	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0007	8314	3	3	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0008	8315	3	0	0	2	0	1	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0009	8316	3	3	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0010	8315	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0011	8315	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0012	8315	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0013	8316	2	1	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0014	8315	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0015	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0016	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0017	8317	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0018	8317	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0019	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0020	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0021	8316	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0022	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793