Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGAP1_chr2_235489043_236136793	0/0	t0023	8316	1	0	0	1	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0024	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0025	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0026	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0027	8313	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0028	8316	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0029	8316	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0030	8316	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0031	8317	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0032	8317	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0033	8318	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0034	8318	1	0	0	1	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0035	8316	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0036	8314	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0037	8315	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0038	8317	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0039	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0040	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0041	8317	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0042	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0043	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0044	8307	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0045	8310	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0046	8310	1	0	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0047	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0048	8315	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	t0049	8314	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP2_chr12_57720197_57743742	0/1	t0001	1853	279	54	53	127	7	37	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0002	1854	41	2	16	16	5	2	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	1/0	t0003	1852	32	22	2	3	1	3	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0004	1853	8	8	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0005	1851	7	6	1	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0006	1854	6	2	0	4	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0007	1854	2	2	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0008	1853	1	0	0	0	1	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0009	1853	1	0	0	0	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0010	1852	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0011	1853	1	0	0	0	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0012	1853	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0013	1844	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	t0014	1853	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP3_chr7_151081475_151149434	0/0	t0001	756	235	45	49	102	12	27	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/1	t0002	753	79	31	13	22	2	10	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0003	756	12	12	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	1/0	t0004	759	9	0	2	3	2	1	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0005	753	8	0	0	8	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0006	759	6	6	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0007	753	3	0	0	3	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0008	756	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	t0009	756	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434