Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGBL1_chr15_86074871_86921156	0/0	t0056	8963	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0057	8963	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0058	8963	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0059	8955	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0060	8963	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0061	8967	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0062	8965	1	0	0	0	1	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0063	8971	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0064	8963	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0065	8962	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0066	8963	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	t0067	8955	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL2_chr11_47654591_47720369	1/1	t0001	878	229	66	32	100	7	22	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0002	878	118	13	28	49	9	19	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0003	878	3	0	0	3	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0004	878	2	2	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0005	878	2	2	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0006	878	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	t0007	878	1	0	0	0	0	1	copy fasta	AGBL2	chr11	47654591	47720369
AGBL3_chr7_134981508_135140778	0/0	t0001	763	139	23	33	47	8	28	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/1	t0002	764	65	15	10	33	1	5	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0003	772	51	9	16	18	3	5	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0004	763	34	31	3	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	1/0	t0005	771	23	7	1	12	0	2	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0006	763	4	4	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0007	764	1	0	1	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0008	763	1	0	0	1	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0009	763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	t0010	772	1	0	0	1	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL4_chr1_48527854_50028954	0/0	t0001	1478	29	12	7	9	0	1	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0002	1474	16	8	1	7	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0003	1482	15	12	1	0	0	2	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0004	1482	11	4	2	3	0	2	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0005	1474	5	4	1	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0006	1478	5	0	0	4	0	1	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0007	1482	4	4	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0008	1486	4	4	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0009	1478	3	0	0	2	0	1	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0010	1482	2	1	1	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0011	1478	2	2	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0012	1486	2	0	0	0	0	2	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0013	1482	2	0	1	0	0	1	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0014	1478	2	2	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0015	1478	1	0	0	1	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	t0016	1482	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL5_chr2_27046668_27075618	1/0	t0001	528	184	71	45	48	7	12	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/1	t0002	528	145	18	24	70	11	21	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	t0003	528	2	0	0	2	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	t0004	528	1	1	0	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	t0005	528	1	0	0	0	0	1	copy fasta	AGBL5	chr2	27046668	27075618