Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGBL5_chr2_27046668_27075618	0/0	t0006	528	1	0	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGER_chr6_32175969_32189253	0/1	t0001	206	448	95	83	209	16	44	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	t0002	204	11	1	1	9	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	t0003	206	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	t0004	206	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGFG1_chr2_227467156_227566217	0/0	t0001	6989	122	25	15	67	2	13	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0002	6990	64	7	5	42	2	8	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0003	6992	25	0	7	13	1	4	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/1	t0004	6989	16	1	6	2	3	3	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0005	6989	15	10	3	0	2	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0006	6993	14	6	1	4	0	3	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0007	6989	7	5	2	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0008	6985	7	1	2	0	0	4	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0009	6993	6	6	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0010	6989	4	3	0	0	0	1	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0011	6989	3	2	1	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0012	6989	3	3	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0013	6993	3	0	0	3	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0014	6989	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0015	6989	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0016	6989	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0017	6989	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0018	6989	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0019	6989	2	0	0	2	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0020	6989	2	0	0	2	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0021	6993	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	1/0	t0022	6989	2	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0023	6985	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0024	6990	1	0	1	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0025	6989	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0026	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0027	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0028	6990	1	0	0	0	0	1	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0029	6990	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0030	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0031	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0032	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0033	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0034	6990	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0035	6989	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0036	6990	1	0	0	0	0	1	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0037	6989	1	0	1	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0038	6989	1	0	0	0	0	1	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0039	6992	1	0	0	0	0	1	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0040	6989	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0041	6993	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	t0042	6993	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG2_chr7_100534203_100573220	0/1	t0001	3373	177	37	30	72	10	27	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0002	3373	16	3	1	9	0	3	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0003	3372	12	0	4	1	3	4	copy fasta	AGFG2	chr7	100534203	100573220