Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGFG2_chr7_100534203_100573220	0/0	t0004	3372	10	10	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0005	3373	5	5	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	1/0	t0006	3374	4	2	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0007	3372	4	4	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0008	3372	3	3	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0009	3372	2	0	0	2	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0010	3373	2	0	0	1	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0011	3373	1	0	0	0	1	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0012	3373	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0013	3373	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0014	3373	1	0	0	1	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0015	3373	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0016	3373	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0017	3373	1	0	1	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0018	3373	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0019	3373	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0020	3372	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	t0021	3373	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGGF1_chr5_77025404_77070234	1/0	t0001	2346	174	35	17	101	4	16	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0002	2346	86	5	22	48	5	6	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0003	2347	71	21	15	21	3	11	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/1	t0004	2346	38	3	17	8	3	6	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0005	2347	10	0	2	8	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0006	2347	7	2	3	0	0	2	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0007	2346	6	4	0	0	0	2	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0008	2346	6	6	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0009	2346	4	3	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0010	2346	4	0	0	4	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0011	2346	4	3	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0012	2346	4	3	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0013	2346	4	0	0	4	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0014	2345	3	1	2	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0015	2346	3	0	1	0	1	1	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0016	2346	2	0	0	2	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0017	2347	2	2	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0018	2346	2	0	0	2	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0019	2347	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0020	2347	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0021	2346	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0022	2346	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0023	2346	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0024	2346	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0025	2346	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	t0026	2346	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGK_chr7_141546410_141660244	1/1	t0001	2360	216	43	39	102	7	23	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0002	2360	24	6	2	10	0	6	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0003	2364	8	7	1	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0004	2360	6	6	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0005	2360	3	1	0	2	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	t0006	2364	3	3	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244