Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGMAT_chr1_15566699_15590051	0/0	t0017	2039	4	1	2	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0018	2039	4	0	0	2	0	2	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0019	2039	3	3	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0020	2038	3	2	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0021	2039	3	0	0	3	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0022	2040	3	0	0	3	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0023	2038	3	0	0	3	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0024	2039	3	0	1	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0025	2039	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0026	2040	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0027	2037	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0028	2038	2	1	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0029	2037	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0030	2042	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0031	2040	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0032	2040	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0033	2041	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0034	2037	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0035	2040	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0036	2041	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0037	2040	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0038	2038	2	0	0	0	2	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0039	2040	2	0	0	1	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0040	2038	2	0	0	2	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0041	2036	2	2	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0042	2038	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0043	2037	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0044	2037	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0045	2040	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0046	2040	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0047	2038	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0048	2040	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0049	2039	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0050	2039	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0051	2037	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0052	2042	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0053	2040	1	0	0	0	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0054	2040	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0055	2039	1	0	0	0	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0056	2039	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0057	2042	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0058	2040	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0059	2041	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0060	2038	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0061	2039	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0062	2041	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0063	2044	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0064	2042	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0065	2041	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0066	2040	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051