Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGMAT_chr1_15566699_15590051	0/0	t0067	2038	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0068	2041	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0069	2039	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0070	2039	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0071	2038	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0072	2038	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0073	2037	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0074	2045	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0075	2040	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0076	2040	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0077	2039	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0078	2038	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0079	2040	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0080	2040	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0081	2038	1	0	0	0	0	1	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0082	2038	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0083	2046	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0084	2044	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0085	2040	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0086	2040	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0087	2041	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0088	2043	1	1	0	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	t0089	2037	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMO_chr7_15195317_15567015	1/1	t0001	1139	150	52	29	34	10	23	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0002	1139	34	12	8	13	0	1	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0003	1139	13	9	1	1	1	1	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0004	1139	11	10	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0005	1139	10	5	3	0	1	1	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0006	1139	7	0	3	4	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0007	1135	5	5	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0008	1138	2	2	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0009	1139	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0010	1139	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0011	1139	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	t0012	1139	1	0	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGO1_chr1_35878209_35935532	0/0	t0001	11139	87	25	20	31	5	6	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0002	11136	63	6	12	40	1	4	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/1	t0003	11140	21	9	3	3	0	5	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0004	11139	11	9	2	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0005	11138	6	2	1	0	0	3	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0006	11140	5	5	0	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0007	11140	4	0	0	4	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0008	11137	4	0	2	2	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0009	11136	4	3	1	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0010	11138	3	0	2	0	0	1	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0011	11140	3	0	0	3	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0012	11140	3	3	0	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0013	11139	3	0	0	0	0	3	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0014	11139	3	0	2	0	0	1	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	t0015	11140	3	1	1	1	0	0	copy fasta	AGO1	chr1	35878209	35935532