Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO4_chr1_35803016_35862890	0/0	t0023	4686	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0024	4685	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0025	4686	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	1/0	t0026	4687	1	0	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0027	4685	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0028	4687	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0029	4687	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0030	4685	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0031	4685	1	0	0	0	0	1	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0032	4685	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0033	4684	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0034	4686	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0035	4685	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	t0036	4685	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGPAT1_chr6_32163212_32181084	0/0	t0001	1345	160	27	27	93	2	11	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0002	1345	148	59	21	46	5	17	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/1	t0003	1345	88	2	25	46	5	9	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0004	1345	16	7	7	0	2	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0005	1346	16	0	0	14	0	2	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0006	1345	7	0	0	1	1	5	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0007	1345	4	0	0	4	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0008	1345	1	0	0	0	1	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0009	1345	1	0	0	1	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0010	1346	1	0	0	1	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0011	1345	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0012	1345	1	0	0	1	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	t0013	1345	1	0	0	1	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT2_chr9_136668143_136692457	0/0	t0001	710	148	22	21	88	3	14	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/1	t0002	710	124	34	29	33	6	21	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	1/0	t0003	710	36	28	3	4	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0004	710	10	0	0	10	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0005	716	8	1	3	0	2	2	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0006	716	7	0	7	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0007	710	6	3	3	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0008	710	6	0	0	6	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0009	710	5	0	2	3	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0010	710	5	5	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0011	710	3	0	0	2	1	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0012	710	3	0	3	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0013	710	2	0	1	0	0	1	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0014	710	2	0	0	2	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0015	710	2	1	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0016	710	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0017	710	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0018	710	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0019	716	1	0	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0020	710	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0021	710	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	t0022	710	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT3_chr21_43860223_43992592	1/1	t0001	5435	101	5	20	55	11	8	copy fasta	AGPAT3	chr21	43860223	43992592