Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPAT3_chr21_43860223_43992592	0/0	t0002	5437	37	7	2	22	0	6	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0003	5435	28	7	0	20	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0004	5436	26	0	16	8	0	2	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0005	5435	7	1	2	0	0	4	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0006	5435	7	6	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0007	5435	7	5	0	2	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0008	5435	6	0	0	0	2	4	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0009	5435	6	0	6	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0010	5435	5	2	1	0	0	2	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0011	5435	5	0	0	3	0	2	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0012	5434	4	4	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0013	5436	4	0	0	1	0	3	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0014	5435	4	0	2	0	0	2	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0015	5433	4	2	2	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0016	5436	3	3	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0017	5434	3	3	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0018	5434	3	3	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0019	5435	3	3	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0020	5434	3	3	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0021	5435	3	0	2	0	1	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0022	5436	3	0	2	0	1	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0023	5435	2	0	2	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0024	5435	2	2	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0025	5433	2	1	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0026	5437	2	0	2	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0027	5435	2	2	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0028	5435	2	0	1	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0029	5436	2	2	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0030	5435	2	2	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0031	5435	2	1	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0032	5435	2	1	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0033	5436	2	0	0	2	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0034	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0035	5435	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0036	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0037	5433	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0038	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0039	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0040	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0041	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0042	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0043	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0044	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0045	5436	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0046	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0047	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0048	5436	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0049	5437	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0050	5436	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0051	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592