Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPAT3_chr21_43860223_43992592	0/0	t0052	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0053	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0054	5437	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0055	5436	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0056	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0057	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0058	5435	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0059	5435	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0060	5434	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0061	5435	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0062	5436	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0063	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0064	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0065	5435	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0066	5435	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0067	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0068	5437	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0069	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0070	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0071	5435	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0072	5433	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0073	5435	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0074	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0075	5435	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0076	5436	1	0	0	0	1	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0077	5437	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0078	5437	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0079	5435	1	0	1	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0080	5437	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	t0081	5435	1	0	0	1	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT4_chr6_161124967_161279061	0/0	t0001	6783	31	3	9	13	2	4	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0002	6783	16	2	2	9	0	3	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0003	6787	16	0	1	8	0	7	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0004	6788	15	1	4	10	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0005	6787	11	0	0	7	0	4	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0006	6789	10	1	3	4	0	2	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0007	6783	9	2	2	3	0	2	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0008	6783	9	6	0	3	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0009	6783	8	0	5	0	1	2	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0010	6783	8	8	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/1	t0011	6780	7	1	4	0	1	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0012	6787	6	1	0	4	0	1	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	1/0	t0013	6787	6	0	3	1	1	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0014	6787	6	6	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0015	6788	5	5	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0016	6788	5	0	5	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0017	6783	4	1	3	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0018	6793	4	3	1	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0019	6790	4	4	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	t0020	6783	3	0	3	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061