Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGTR2_chrX_116165744_116179974	0/1	t0001	1771	141	35	25	69	4	7	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	1/0	t0002	1771	74	19	5	36	1	12	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0003	1771	64	17	8	21	7	11	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0004	1771	34	0	5	27	1	1	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0005	1771	6	0	5	0	0	1	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0006	1771	5	2	3	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0007	1771	2	2	0	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0008	1779	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0009	1771	1	1	0	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0010	1772	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0011	1771	1	1	0	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0012	1774	1	1	0	0	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTR2_chrX_116165744_116179974	0/0	t0013	1763	1	0	0	1	0	0	copy fasta	AGTR2	chrX	116165744	116179974
AGTRAP_chr1_11731136_11755769	0/1	t0001	651	258	53	54	118	11	21	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0002	651	87	4	16	50	5	12	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0003	651	29	3	9	6	2	9	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0004	651	12	12	0	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	1/0	t0005	651	11	9	1	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0006	651	9	8	1	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0007	658	3	3	0	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0008	651	2	0	0	1	0	1	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0009	651	2	0	0	0	0	2	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0010	651	2	0	2	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0011	651	1	0	0	0	0	1	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0012	651	1	0	0	1	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0013	651	1	0	0	1	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0014	651	1	0	1	0	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGTRAP_chr1_11731136_11755769	0/0	t0015	651	1	0	0	1	0	0	copy fasta	AGTRAP	chr1	11731136	11755769
AGT_chr1_230697523_230719122	1/1	t0001	686	378	84	66	182	11	33	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0002	686	64	6	15	25	6	12	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0003	686	7	7	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0004	686	2	0	0	1	0	1	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0005	686	1	0	0	0	0	1	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0006	686	1	0	0	0	0	1	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0007	686	1	0	1	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0008	686	1	1	0	0	0	0	copy fasta	AGT	chr1	230697523	230719122
AGT_chr1_230697523_230719122	0/0	t0009	686	1	0	0	0	1	0	copy fasta	AGT	chr1	230697523	230719122
AGXT2_chr5_34993102_35052949	1/0	t0001	675	146	29	28	70	5	13	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/1	t0002	674	103	7	13	72	2	8	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0003	675	78	19	18	19	6	16	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0004	675	47	29	10	6	1	1	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0005	675	6	6	0	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0006	674	2	0	2	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0007	675	1	0	0	1	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT2_chr5_34993102_35052949	0/0	t0008	674	1	0	1	0	0	0	copy fasta	AGXT2	chr5	34993102	35052949
AGXT_chr2_240863824_240885500	1/0	t0001	1722	109	3	20	58	9	18	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/1	t0002	1722	91	10	15	49	6	10	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0003	1722	70	29	8	27	1	5	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0004	1722	61	2	4	55	0	0	copy fasta	AGXT	chr2	240863824	240885500
AGXT_chr2_240863824_240885500	0/0	t0005	1722	28	0	2	22	0	4	copy fasta	AGXT	chr2	240863824	240885500